Variant report

Variant	rs6794167
Chromosome Location	chr3:112417657-112417658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10934181	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1249922	0.89[EUR][1000 genomes]
rs13088906	0.90[AFR][1000 genomes]
rs1387014	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2633967	0.89[EUR][1000 genomes]
rs35907597	0.89[EUR][1000 genomes]
rs4682115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682419	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6438100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs820538	0.89[EUR][1000 genomes]
rs9821598	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112409400-112418200	Weak transcription	A549	lung
2	chr3:112409400-112418400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:112412600-112418200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:112414800-112418000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:112415200-112418000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:112415200-112418000	Weak transcription	Osteobl	bone
7	chr3:112415200-112418200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:112415600-112418200	Weak transcription	NHLF	lung
9	chr3:112415800-112417800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:112415800-112418200	Weak transcription	HSMMtube	muscle
11	chr3:112416000-112417800	Weak transcription	NHDF-Ad	bronchial
12	chr3:112416200-112418600	Enhancers	K562	blood
13	chr3:112416800-112418600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:112417000-112418800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:112417000-112419000	Enhancers	HSMM	muscle
16	chr3:112417200-112418000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:112417600-112419000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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