Variant report

Variant	rs13091140
Chromosome Location	chr3:133918663-133918664
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6796675	0.87[AFR][1000 genomes]
rs7428966	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133871800-133919200	Weak transcription	K562	blood
2	chr3:133874400-133929400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:133874600-133933600	Weak transcription	Colonic Mucosa	Colon
4	chr3:133877600-133935200	Weak transcription	Psoas Muscle	Psoas
5	chr3:133877800-133920200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
7	chr3:133885600-133919600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:133888400-133923600	Weak transcription	Fetal Heart	heart
9	chr3:133894800-133935200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:133894800-133946800	Weak transcription	Pancreas	Pancrea
11	chr3:133895000-133918800	Weak transcription	Aorta	Aorta
12	chr3:133895000-133950000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:133895000-133950200	Weak transcription	Gastric	stomach
14	chr3:133895200-133919600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:133895200-133927200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:133895600-133942800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:133895800-133923400	Weak transcription	Lung	lung
18	chr3:133898600-133919400	Weak transcription	A549	lung
19	chr3:133899000-133919200	Weak transcription	NHLF	lung
20	chr3:133899600-133919000	Weak transcription	Brain Germinal Matrix	brain
21	chr3:133900200-133918800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:133902000-133919600	Weak transcription	Fetal Brain Male	brain
23	chr3:133902000-133930400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:133902800-133919600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:133903000-133929000	Weak transcription	GM12878-XiMat	blood
26	chr3:133903600-133919000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:133907800-133927400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:133908000-133919400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:133909200-133919200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:133909200-133920400	Weak transcription	Brain Angular Gyrus	brain
31	chr3:133909200-133943000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:133909400-133919600	Weak transcription	Fetal Kidney	kidney
33	chr3:133910600-133919400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr3:133911200-133919000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:133911600-133929600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr3:133911600-133929800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:133913000-133919800	Weak transcription	NHDF-Ad	bronchial
38	chr3:133913800-133919600	Weak transcription	Hela-S3	cervix
39	chr3:133914000-133919800	Weak transcription	HUVEC	blood vessel
40	chr3:133914600-133919600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:133914800-133919000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:133915000-133919000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr3:133915200-133919200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr3:133915400-133919000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:133916200-133919400	Weak transcription	Dnd41	blood
46	chr3:133916200-133919400	Weak transcription	NH-A	brain
47	chr3:133916200-133920200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:133916600-133919400	Weak transcription	HepG2	liver
49	chr3:133917200-133919800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:133917200-133920400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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