Variant report

Variant	rs13091964
Chromosome Location	chr3:178524705-178524706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13073878	0.89[CEU][hapmap]
rs13080577	0.80[CEU][hapmap]
rs13082447	0.80[CEU][hapmap]
rs35754257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3924404	1.00[CEU][hapmap]
rs6783917	0.80[CEU][hapmap]
rs7611588	0.80[CEU][hapmap]
rs7612729	0.80[CEU][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13091964	MAP6D1	cis	cerebellum	SCAN
rs13091964	MCCC1	cis	parietal	SCAN
rs13091964	ABCC5	cis	cerebellum	SCAN
rs13091964	DVL3	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178521400-178524800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:178522600-178525800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:178524000-178525000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:178524000-178525200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:178524000-178525600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:178524000-178540800	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:178524600-178528400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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