Variant report

Variant	rs7612729
Chromosome Location	chr3:178452941-178452942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178452755..178455709-chr3:179039442..179041516,2	K562	blood:

Variant related genes	Relation type
ENSG00000121864	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13060883	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066302	1.00[JPT][hapmap]
rs13073878	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs13073896	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079349	1.00[JPT][hapmap]
rs13080577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091964	0.80[CEU][hapmap]
rs13096550	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100117	1.00[JPT][hapmap]
rs34162444	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34230767	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34675039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282710	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35766649	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35904562	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924404	1.00[CEU][hapmap]
rs61796872	1.00[ASN][1000 genomes]
rs61796924	1.00[ASN][1000 genomes]
rs6772891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803453	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882743	1.00[JPT][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178442200-178454200	Weak transcription	Left Ventricle	heart
2	chr3:178448400-178453200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:178450400-178458400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:178452200-178454400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:178452400-178454400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:178452600-178454600	Enhancers	Fetal Heart	heart
7	chr3:178452800-178453200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:178452800-178453400	Enhancers	Aorta	Aorta
9	chr3:178452800-178453400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:178452800-178453600	Enhancers	Right Ventricle	heart
11	chr3:178452800-178454000	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:178452800-178454400	Enhancers	Colon Smooth Muscle	Colon

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