Variant report

Variant	rs34230767
Chromosome Location	chr3:178433505-178433506
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178422111..178424157-chr3:178430797..178433689,2	MCF-7	breast:
2	chr3:178433213..178435549-chr3:178437519..178439696,2	K562	blood:
3	chr3:178431500..178435531-chr3:178436840..178441051,4	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13060883	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073896	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080577	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082447	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087051	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096550	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34162444	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34675039	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282710	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35766649	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35904562	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61796872	1.00[ASN][1000 genomes]
rs61796924	1.00[ASN][1000 genomes]
rs6772891	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783917	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803453	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611588	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612729	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178417800-178436800	Weak transcription	Right Ventricle	heart
2	chr3:178425400-178435000	Weak transcription	Left Ventricle	heart
3	chr3:178429600-178434000	Enhancers	Fetal Heart	heart
4	chr3:178431200-178434000	Enhancers	Fetal Muscle Leg	muscle
5	chr3:178432200-178433800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:178432200-178434000	Enhancers	GM12878-XiMat	blood
7	chr3:178432200-178436600	Weak transcription	Right Atrium	heart
8	chr3:178432400-178433600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:178432400-178433800	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:178432600-178433800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:178432600-178433800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:178432600-178433800	Enhancers	HSMM	muscle
13	chr3:178432600-178434800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:178432800-178433800	Flanking Active TSS	HSMMtube	muscle
15	chr3:178432800-178433800	Enhancers	NHEK	skin
16	chr3:178432800-178436200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:178432800-178436600	Weak transcription	Fetal Lung	lung
18	chr3:178433000-178433600	Enhancers	Brain Angular Gyrus	brain
19	chr3:178433200-178433600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:178433200-178436800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:178433400-178433800	Enhancers	Brain Germinal Matrix	brain
22	chr3:178433400-178433800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:178433400-178436600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr3:178433400-178436800	Weak transcription	Muscle Satellite Cultured Cells	--

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