Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178543542..178551305-chr3:178552157..178562303,11	MCF-7	breast:
2	chr3:178545028..178546976-chr3:178549794..178552747,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13060883	1.00[JPT][hapmap]
rs13064262	0.86[CEU][hapmap];1.00[CHD][hapmap]
rs13065598	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs13066302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13073878	1.00[JPT][hapmap]
rs13079349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080577	1.00[JPT][hapmap]
rs13081186	0.86[CEU][hapmap]
rs13082447	1.00[JPT][hapmap]
rs13087051	1.00[JPT][hapmap]
rs13087141	0.86[CEU][hapmap]
rs13097309	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326218	0.86[YRI][hapmap]
rs34204368	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34801218	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35616186	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4419362	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772891	1.00[JPT][hapmap]
rs6783917	1.00[JPT][hapmap]
rs6807583	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs7611588	1.00[JPT][hapmap]
rs7612729	1.00[JPT][hapmap]
rs9848615	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436263	chr3:178548158-178552756	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv18827	chr3:178550206-178568168	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv592643	chr3:178550246-178553756	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv592644	chr3:178550246-178554554	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv592645	chr3:178550246-178568129	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13100117	ALG3	cis	parietal	SCAN
rs13100117	YEATS2	cis	cerebellum	SCAN
rs13100117	MAP6D1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
3	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:178546400-178563000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:178550400-178562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:178552600-178554000	Enhancers	GM12878-XiMat	blood

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