Variant report

Variant	rs35616186
Chromosome Location	chr3:178545952-178545953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13065598	0.81[AMR][1000 genomes]
rs13066302	0.95[ASN][1000 genomes]
rs13079349	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100117	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34204368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34801218	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4419362	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848615	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882743	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1841956	chr3:178545276-178550530	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178541600-178547000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:178541800-178547800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:178541800-178550600	Weak transcription	Fetal Kidney	kidney
5	chr3:178542000-178547200	Weak transcription	Fetal Stomach	stomach
6	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
7	chr3:178543600-178551200	Weak transcription	Ovary	ovary
8	chr3:178544600-178546400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:178544800-178546200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:178544800-178546200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:178545000-178546400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:178545000-178546800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:178545200-178546600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:178545400-178546200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:178545400-178546200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:178545400-178546200	Weak transcription	GM12878-XiMat	blood
18	chr3:178545400-178546400	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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