Variant report

Variant	rs4419362
Chromosome Location	chr3:178566680-178566681
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178563436..178567007-chr3:178568860..178573987,6	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13065598	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13066302	0.95[ASN][1000 genomes]
rs13079349	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097309	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100117	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34204368	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34801218	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35616186	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61796573	0.80[EUR][1000 genomes]
rs9848615	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882743	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18827	chr3:178550206-178568168	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv592645	chr3:178550246-178568129	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178558800-178566800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:178559200-178567600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:178559800-178566800	Weak transcription	Left Ventricle	heart
4	chr3:178562400-178567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:178562800-178569200	Enhancers	Colon Smooth Muscle	Colon
6	chr3:178563000-178567800	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:178563400-178567400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:178563400-178567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:178563600-178567800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:178564800-178567600	Weak transcription	NHDF-Ad	bronchial
11	chr3:178565600-178567000	Enhancers	Aorta	Aorta
12	chr3:178565600-178567200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:178565800-178568000	Enhancers	HSMM	muscle
14	chr3:178566000-178566800	Weak transcription	Right Atrium	heart
15	chr3:178566000-178567000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:178566000-178567600	Enhancers	Brain Germinal Matrix	brain
17	chr3:178566000-178567600	Enhancers	HSMMtube	muscle
18	chr3:178566000-178567800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr3:178566200-178567400	Enhancers	Fetal Heart	heart
20	chr3:178566600-178567000	Flanking Active TSS	Fetal Brain Male	brain
21	chr3:178566600-178567200	Enhancers	Right Ventricle	heart
22	chr3:178566600-178567400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr3:178566600-178568000	Enhancers	Fetal Stomach	stomach
24	chr3:178566600-178570200	Enhancers	Fetal Lung	lung

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