Variant report

Variant	rs6807583
Chromosome Location	chr3:178539486-178539487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178539075..178542360-chr3:178542522..178545217,3	K562	blood:
2	chr3:178539180..178542360-chr3:178542522..178544332,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11709071	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11716970	0.91[AFR][1000 genomes]
rs11721205	0.89[ASW][hapmap];0.98[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11914342	0.89[ASW][hapmap];0.98[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs11916314	0.90[AFR][1000 genomes]
rs11924270	0.83[AFR][1000 genomes]
rs11927700	0.91[AFR][1000 genomes]
rs11929676	0.89[ASW][hapmap];0.98[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs13064262	0.81[CHD][hapmap]
rs13066302	1.00[CHB][hapmap]
rs13079349	1.00[CHB][hapmap]
rs13090876	0.88[AFR][1000 genomes]
rs13100117	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs28490096	0.91[AFR][1000 genomes]
rs28733874	0.91[AFR][1000 genomes]
rs28751916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4131862	0.91[AFR][1000 genomes]
rs4131863	0.91[AFR][1000 genomes]
rs60725021	0.90[AFR][1000 genomes]
rs6765556	0.89[ASW][hapmap];0.98[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6765682	0.90[AFR][1000 genomes]
rs6779867	0.91[AFR][1000 genomes]
rs6780023	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6789905	0.90[AFR][1000 genomes]
rs6789945	0.89[ASW][hapmap];0.98[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6804163	0.91[AFR][1000 genomes]
rs73053720	0.91[AFR][1000 genomes]
rs73053731	0.91[AFR][1000 genomes]
rs73053734	0.91[AFR][1000 genomes]
rs73053748	0.87[AFR][1000 genomes]
rs7626641	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814677	0.90[AFR][1000 genomes]
rs9819352	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9819394	0.91[AFR][1000 genomes]
rs9819552	0.90[AFR][1000 genomes]
rs9819671	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9824836	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9828010	0.91[AFR][1000 genomes]
rs9828148	0.91[AFR][1000 genomes]
rs9828153	0.91[AFR][1000 genomes]
rs9833798	0.89[AFR][1000 genomes]
rs9837702	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs9851600	0.90[AFR][1000 genomes]
rs9857688	0.90[AFR][1000 genomes]
rs9857760	0.91[AFR][1000 genomes]
rs9878489	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882743	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6807583	MAP6D1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178524000-178540800	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:178538800-178539600	Enhancers	HSMMtube	muscle
3	chr3:178539000-178540600	Weak transcription	Ovary	ovary

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