Variant report

Variant	rs13093550
Chromosome Location	chr3:81046672-81046673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11711508	0.85[ASN][1000 genomes]
rs11712718	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716250	0.88[ASN][1000 genomes]
rs13071103	0.88[ASN][1000 genomes]
rs13076655	0.87[ASN][1000 genomes]
rs13077187	0.88[ASN][1000 genomes]
rs13090674	0.84[ASN][1000 genomes]
rs1438563	0.97[ASN][1000 genomes]
rs2372451	0.83[ASN][1000 genomes]
rs34669609	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34743396	0.83[ASN][1000 genomes]
rs35234863	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321489	0.82[ASN][1000 genomes]
rs60843177	0.88[ASN][1000 genomes]
rs66506603	0.83[ASN][1000 genomes]
rs66528531	0.87[ASN][1000 genomes]
rs6805345	0.87[ASN][1000 genomes]
rs6807149	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9842552	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877039	chr3:80819678-81062618	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1009689	chr3:80856608-81141322	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv536602	chr3:80856608-81141322	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1004043	chr3:80990868-81172472	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877040	chr3:81027695-81113949	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81045600-81048800	Enhancers	Fetal Intestine Large	intestine
2	chr3:81046200-81047400	Flanking Active TSS	Liver	Liver
3	chr3:81046400-81047600	Enhancers	HepG2	liver
4	chr3:81046600-81048800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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