Variant report

Variant	rs34669609
Chromosome Location	chr3:81027242-81027243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11711508	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11712718	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11716250	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13071103	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13076655	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13077187	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13090674	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13093550	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1438563	0.95[ASN][1000 genomes]
rs17391539	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2372451	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34743396	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35234863	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4321489	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60843177	0.89[ASN][1000 genomes]
rs66506603	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66528531	0.88[ASN][1000 genomes]
rs6805345	0.88[ASN][1000 genomes]
rs6807149	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621529	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9842552	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv877039	chr3:80819678-81062618	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1009689	chr3:80856608-81141322	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv536602	chr3:80856608-81141322	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1004043	chr3:80990868-81172472	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81026400-81028000	Enhancers	Brain Germinal Matrix	brain
2	chr3:81026600-81027400	Enhancers	Fetal Brain Female	brain
3	chr3:81026600-81029000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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