Variant report

Variant	rs13094397
Chromosome Location	chr3:109571091-109571092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1164227	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11715893	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3915171	0.84[ASN][1000 genomes]
rs588487	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594096	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs597310	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs600054	0.80[ASN][1000 genomes]
rs608926	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs620683	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs622048	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs652760	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs656177	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs677533	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs678058	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs680451	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs684185	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs685147	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs688616	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1011265	chr3:109474218-109625143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109570600-109571400	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr3:109570800-109571400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:109570800-109571600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:109570800-109572400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:109571000-109572400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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