Variant report

Variant	rs600054
Chromosome Location	chr3:109663694-109663695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1164227	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13094397	0.80[ASN][1000 genomes]
rs2682531	0.88[ASN][1000 genomes]
rs2693620	0.88[ASN][1000 genomes]
rs2693635	0.89[ASN][1000 genomes]
rs2700255	0.88[ASN][1000 genomes]
rs2700258	0.91[ASN][1000 genomes]
rs3915171	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588487	0.80[ASN][1000 genomes]
rs594096	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs597310	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs603148	0.88[ASN][1000 genomes]
rs604438	0.88[ASN][1000 genomes]
rs604985	0.86[ASN][1000 genomes]
rs606216	0.91[ASN][1000 genomes]
rs608926	0.84[ASN][1000 genomes]
rs612254	0.91[ASN][1000 genomes]
rs614450	0.91[ASN][1000 genomes]
rs614804	0.90[ASN][1000 genomes]
rs617517	0.91[ASN][1000 genomes]
rs618829	0.88[ASN][1000 genomes]
rs620683	0.84[ASN][1000 genomes]
rs622048	0.84[ASN][1000 genomes]
rs623226	0.91[ASN][1000 genomes]
rs626977	0.91[ASN][1000 genomes]
rs627434	0.91[ASN][1000 genomes]
rs632144	0.89[ASN][1000 genomes]
rs642983	0.91[ASN][1000 genomes]
rs652760	0.82[ASN][1000 genomes]
rs654027	0.88[ASN][1000 genomes]
rs654076	0.88[ASN][1000 genomes]
rs654095	0.88[ASN][1000 genomes]
rs656177	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs657025	0.91[ASN][1000 genomes]
rs657834	0.91[ASN][1000 genomes]
rs664861	0.91[ASN][1000 genomes]
rs666129	0.91[ASN][1000 genomes]
rs666533	0.88[ASN][1000 genomes]
rs666674	0.91[ASN][1000 genomes]
rs667338	0.91[ASN][1000 genomes]
rs671574	0.91[ASN][1000 genomes]
rs672489	0.91[ASN][1000 genomes]
rs673959	0.91[ASN][1000 genomes]
rs678058	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs680451	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs684185	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs685147	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs686071	0.83[ASN][1000 genomes]
rs686207	0.88[ASN][1000 genomes]
rs687955	0.91[ASN][1000 genomes]
rs688616	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009550	chr3:109577315-109795453	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1839660	chr3:109591203-109678542	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv829666	chr3:109593745-109768652	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2754434	chr3:109604310-109777310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109663600-109664000	Enhancers	HSMM	muscle
2	chr3:109663600-109664200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:109663600-109664400	Enhancers	Muscle Satellite Cultured Cells	--

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