Variant report

Variant	rs13095709
Chromosome Location	chr3:136408037-136408038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13099529	1.00[AFR][1000 genomes]
rs34361206	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136381800-136410800	Weak transcription	Psoas Muscle	Psoas
2	chr3:136386400-136412800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:136387200-136412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:136390200-136413000	Weak transcription	Pancreas	Pancrea
5	chr3:136390600-136412000	Weak transcription	Thymus	Thymus
6	chr3:136390800-136447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:136393800-136408400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:136394200-136409800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:136395000-136410200	Weak transcription	Small Intestine	intestine
10	chr3:136395000-136418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:136396600-136411800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:136398600-136410200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:136400600-136412000	Weak transcription	Primary B cells from cord blood	blood
14	chr3:136402400-136409000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:136403600-136408600	Weak transcription	Lung	lung
16	chr3:136403600-136410800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:136404800-136410600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:136405000-136412400	Weak transcription	Fetal Intestine Small	intestine
19	chr3:136405400-136409200	Weak transcription	K562	blood
20	chr3:136405400-136410200	Weak transcription	Left Ventricle	heart
21	chr3:136405400-136413000	Weak transcription	Fetal Heart	heart
22	chr3:136405600-136410200	Weak transcription	GM12878-XiMat	blood
23	chr3:136406200-136409800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:136407400-136408800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:136407400-136409600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:136407600-136408400	Weak transcription	HepG2	liver
27	chr3:136407600-136409000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr3:136407600-136409800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:136407600-136410600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:136407600-136411800	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr3:136407800-136408200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:136407800-136408800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:136407800-136412400	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:136408000-136409200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr3:136408000-136409800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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