Variant report

Variant	rs13099529
Chromosome Location	chr3:136627606-136627607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13095709	1.00[AFR][1000 genomes]
rs71336089	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136613200-136648800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:136613600-136633600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:136613600-136638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:136619200-136656800	Weak transcription	NHLF	lung
5	chr3:136621000-136628000	Weak transcription	Hela-S3	cervix
6	chr3:136622200-136628000	Weak transcription	Liver	Liver
7	chr3:136622200-136633000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:136623200-136631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:136623800-136628000	Weak transcription	Brain Substantia Nigra	brain
10	chr3:136624000-136628600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:136624000-136630200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:136624200-136630800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:136624200-136664400	Weak transcription	Aorta	Aorta
14	chr3:136624400-136630000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr3:136624400-136630400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr3:136624600-136629200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:136624600-136632000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:136624600-136637600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:136624600-136639800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:136624800-136630000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:136624800-136632000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:136625000-136628600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:136625800-136627800	Weak transcription	Thymus	Thymus
24	chr3:136626000-136627800	Weak transcription	Stomach Mucosa	stomach
25	chr3:136626000-136633400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:136626000-136638400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:136626000-136646400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:136626000-136661600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:136626200-136627800	Weak transcription	Brain Anterior Caudate	brain
30	chr3:136626200-136627800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr3:136626200-136633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:136626200-136633000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr3:136626200-136633200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:136626200-136640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:136626400-136628000	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:136626400-136629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:136626400-136629400	Enhancers	Primary T cells from cord blood	blood
38	chr3:136626400-136633000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr3:136626400-136635600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:136626400-136636600	Weak transcription	Right Ventricle	heart
41	chr3:136626400-136637400	Weak transcription	Left Ventricle	heart
42	chr3:136626400-136646800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:136626400-136647000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:136626400-136648800	Weak transcription	HMEC	breast
45	chr3:136626400-136649200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr3:136626600-136627800	Weak transcription	Brain Hippocampus Middle	brain
47	chr3:136626600-136628800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:136626600-136629600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:136626600-136630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr3:136626600-136630200	Weak transcription	HUVEC	blood vessel

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