Variant report

Variant	rs13096827
Chromosome Location	chr3:179665976-179665977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11917103	0.97[EUR][1000 genomes]
rs11923858	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17749273	0.99[EUR][1000 genomes]
rs34985833	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35040076	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35068209	0.98[EUR][1000 genomes]
rs35102009	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35362105	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62290481	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6770479	0.94[EUR][1000 genomes]
rs6795496	0.97[EUR][1000 genomes]
rs6807998	0.97[EUR][1000 genomes]
rs9820001	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179660400-179667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:179660600-179666400	Weak transcription	Fetal Kidney	kidney
3	chr3:179660600-179666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:179660600-179666800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:179660600-179667400	Weak transcription	Thymus	Thymus
6	chr3:179660600-179680800	Weak transcription	Pancreas	Pancrea
7	chr3:179661200-179666000	Weak transcription	Fetal Thymus	thymus
8	chr3:179661200-179667400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:179661200-179671400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:179661400-179666200	Weak transcription	Brain Anterior Caudate	brain
11	chr3:179664200-179667400	Weak transcription	Dnd41	blood
12	chr3:179664400-179666400	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:179664800-179666000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:179664800-179666200	Weak transcription	Brain Substantia Nigra	brain
15	chr3:179664800-179667200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:179664800-179667400	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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