Variant report

Variant	rs35362105
Chromosome Location	chr3:179669466-179669467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11917103	0.97[EUR][1000 genomes]
rs11923858	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13096827	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17749273	0.98[EUR][1000 genomes]
rs34985833	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35040076	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35068209	0.97[EUR][1000 genomes]
rs35102009	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62290481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770479	0.93[EUR][1000 genomes]
rs6795496	0.97[EUR][1000 genomes]
rs6807998	0.97[EUR][1000 genomes]
rs9820001	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179660600-179680800	Weak transcription	Pancreas	Pancrea
2	chr3:179661200-179671400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:179666000-179670200	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:179666400-179670200	Enhancers	Brain Hippocampus Middle	brain
5	chr3:179668000-179672200	Weak transcription	Thymus	Thymus
6	chr3:179668000-179675200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:179668800-179671400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:179668800-179671400	Weak transcription	Fetal Thymus	thymus
9	chr3:179668800-179672200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:179669000-179669600	Enhancers	Dnd41	blood
11	chr3:179669000-179671200	Weak transcription	Brain Substantia Nigra	brain
12	chr3:179669000-179671600	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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