Variant report

Variant	rs13098435
Chromosome Location	chr3:43182233-43182234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11718469	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13061707	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087759	0.86[EUR][1000 genomes]
rs1878723	0.89[ASN][1000 genomes]
rs1878724	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2372337	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34118369	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4683357	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7648947	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43181400-43184200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:43181400-43184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:43181400-43184200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:43181400-43184200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:43182200-43184000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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