Variant report

Variant	rs1878724
Chromosome Location	chr3:43187058-43187059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11718469	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13061707	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13098435	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2372337	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4683357	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7648947	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43184400-43188600	Weak transcription	HepG2	liver
2	chr3:43186200-43187400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:43186200-43187400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:43186400-43187200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:43186400-43187400	Enhancers	HUVEC	blood vessel
6	chr3:43186600-43187200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:43186600-43187600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:43186800-43187400	Enhancers	Osteobl	bone
9	chr3:43186800-43187600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:43187000-43187400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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