The 2.0 version of rSNPBase

Variant report

Variant rs13099848
Chromosome Location chr3:142408027-142408028
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:29 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:142366000-142435400 Weak transcription Colonic Mucosa Colon
2 chr3:142369400-142408400 Weak transcription Pancreas Pancrea
3 chr3:142379200-142413000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr3:142384400-142411400 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr3:142385800-142415400 Weak transcription A549 lung
6 chr3:142386400-142411800 Weak transcription NHEK skin
7 chr3:142387400-142413400 Weak transcription Stomach Mucosa stomach
8 chr3:142389200-142412400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr3:142389200-142414800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr3:142389400-142408800 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr3:142389400-142410000 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr3:142389800-142442400 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr3:142392600-142410200 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr3:142392800-142418000 Weak transcription HepG2 liver
15 chr3:142392800-142425400 Weak transcription Dnd41 blood
16 chr3:142392800-142433000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr3:142393000-142426000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr3:142393400-142426200 Weak transcription Primary hematopoietic stem cells blood
19 chr3:142401200-142410000 Weak transcription Primary T cells from cord blood blood
20 chr3:142402400-142408800 Strong transcription Duodenum Mucosa Duodenum
21 chr3:142403000-142412800 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr3:142404200-142418000 Weak transcription HMEC breast
23 chr3:142404600-142416200 Weak transcription Fetal Intestine Small intestine
24 chr3:142405800-142411600 Weak transcription Fetal Intestine Large intestine
25 chr3:142406000-142408400 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr3:142406800-142408800 Strong transcription Liver Liver
27 chr3:142407000-142410600 Strong transcription Rectal Mucosa Donor 29 rectum
28 chr3:142407200-142417000 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr3:142407400-142409000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015