Variant report

Variant	rs6785894
Chromosome Location	chr3:142384363-142384364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142383404..142385112-chr3:142394105..142396911,2	MCF-7	breast:
2	chr3:142369264..142373195-chr3:142384252..142386650,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11715610	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12695767	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12695768	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13058771	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13069113	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13079246	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13080785	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13099848	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13100985	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1357529	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1357530	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16852486	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17623267	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916639	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1983434	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1983435	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2012010	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2030613	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2049325	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2049326	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2140432	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2177396	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2354175	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2354860	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2883380	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736560	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3736561	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4413348	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4683688	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683689	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683690	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683691	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6440098	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6440099	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6440102	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6775813	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6783203	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6784089	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6784361	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6789958	0.91[EUR][1000 genomes]
rs6793735	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6797492	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6798232	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6802734	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6802774	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6808205	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6808302	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7430429	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7609842	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7615316	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7631313	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7635146	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7646880	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7648354	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs940211	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs940212	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824176	0.82[ASN][1000 genomes]
rs9824893	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9832606	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866958	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9882763	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142369400-142408400	Weak transcription	Pancreas	Pancrea
3	chr3:142371000-142393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:142372600-142391200	Weak transcription	K562	blood
5	chr3:142376600-142388800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:142379200-142413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:142380000-142390000	Weak transcription	Dnd41	blood
8	chr3:142380000-142390400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:142380000-142391800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:142380200-142388800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:142380200-142391000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:142381800-142385800	Enhancers	Fetal Intestine Small	intestine
13	chr3:142382000-142385200	Enhancers	Fetal Intestine Large	intestine
14	chr3:142382200-142385200	Enhancers	Stomach Mucosa	stomach
15	chr3:142382600-142384400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:142382600-142400400	Weak transcription	Gastric	stomach
17	chr3:142382800-142384400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr3:142383000-142384400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr3:142383200-142384400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:142383200-142384400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr3:142383200-142388800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:142383400-142384400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:142383800-142384400	Flanking Active TSS	Liver	Liver
24	chr3:142383800-142384800	Enhancers	Duodenum Mucosa	Duodenum
25	chr3:142384000-142384600	Enhancers	A549	lung
26	chr3:142384000-142384600	Enhancers	HepG2	liver
27	chr3:142384000-142386200	Weak transcription	Fetal Kidney	kidney
28	chr3:142384200-142384400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr3:142384200-142385000	Enhancers	Pancreatic Islets	Pancreatic Islet

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