Variant report

Variant	rs13101119
Chromosome Location	chr3:83607380-83607381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12106896	0.85[EUR][1000 genomes]
rs1357802	0.81[EUR][1000 genomes]
rs1453735	0.89[EUR][1000 genomes]
rs1823827	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1840218	0.89[EUR][1000 genomes]
rs1840219	0.89[EUR][1000 genomes]
rs2045075	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2056606	0.81[EUR][1000 genomes]
rs2056607	0.81[EUR][1000 genomes]
rs4277705	0.88[EUR][1000 genomes]
rs6548882	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7632573	0.81[EUR][1000 genomes]
rs7645076	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8180047	0.86[AMR][1000 genomes]
rs8180101	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs935979	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9824508	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460739	chr3:83547435-83626697	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv525529	chr3:83579878-83625938	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83606800-83607400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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