Variant report

Variant	rs1840218
Chromosome Location	chr3:83666361-83666362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12106896	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13101119	0.89[EUR][1000 genomes]
rs1357802	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1453733	0.85[AFR][1000 genomes]
rs1453735	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1823827	0.80[AMR][1000 genomes]
rs1840219	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2045075	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2056606	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2056607	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4277705	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6548882	0.80[AMR][1000 genomes]
rs7632573	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7645076	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8180101	0.80[AMR][1000 genomes]
rs935979	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9824508	0.82[EUR][1000 genomes]
rs9878817	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006081	chr3:83421626-84262106	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460741	chr3:83626697-83867681	ZNF genes & repeats Weak transcription Enhancers Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590811	chr3:83626697-83867681	Enhancers Active TSS ZNF genes & repeats Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:83665200-83671200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:83666200-83667200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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