Variant report

Variant	rs13101950
Chromosome Location	chr4:22533398-22533399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10026861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938910	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1120044	0.81[YRI][hapmap]
rs11722502	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11731497	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462990	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1462999	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1841829	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2323549	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2323550	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2323623	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6836431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6858626	0.83[CEU][hapmap]
rs7686030	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7694947	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22527200-22534000	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:22532200-22534200	Enhancers	Fetal Muscle Leg	muscle
3	chr4:22532600-22534800	Enhancers	HSMMtube	muscle
4	chr4:22533000-22534000	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links