Variant report
| Variant | rs6858626 |
|---|---|
| Chromosome Location | chr4:22592929-22592930 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10026861 | 0.81[EUR][1000 genomes] |
| rs10027019 | 0.81[EUR][1000 genomes] |
| rs10938910 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11722502 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11731497 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12503531 | 0.81[AMR][1000 genomes] |
| rs13101950 | 0.83[CEU][hapmap] |
| rs1462990 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1462999 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1841829 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2010711 | 0.91[CEU][hapmap] |
| rs2010720 | 0.81[AMR][1000 genomes] |
| rs2323549 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2323550 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2323623 | 0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs55679609 | 0.82[AMR][1000 genomes] |
| rs56134375 | 0.81[AMR][1000 genomes] |
| rs57520256 | 0.81[AMR][1000 genomes] |
| rs61793446 | 0.81[AMR][1000 genomes] |
| rs61793582 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs61793583 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs61793584 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs61795774 | 0.82[AMR][1000 genomes] |
| rs61795775 | 0.82[AMR][1000 genomes] |
| rs68087263 | 0.82[AMR][1000 genomes] |
| rs6811994 | 0.90[CEU][hapmap] |
| rs6827718 | 0.81[AMR][1000 genomes] |
| rs6836431 | 0.81[EUR][1000 genomes] |
| rs73119638 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7680019 | 0.82[AMR][1000 genomes] |
| rs7686030 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7694947 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349061 | chr4:22379581-22887563 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv821634 | chr4:22427074-22865948 | Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1007053 | chr4:22573534-22658117 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
