Variant report

Variant	rs13104736
Chromosome Location	chr4:26267598-26267599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11942812	0.85[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap]
rs62409730	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655052	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs7680528	0.85[CEU][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26257800-26268600	Weak transcription	Fetal Brain Male	brain
2	chr4:26264400-26269800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:26264600-26269000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:26265200-26269600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:26265400-26267600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:26266400-26275000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
8	chr4:26266600-26267600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:26266800-26268200	Weak transcription	Fetal Stomach	stomach
10	chr4:26267200-26270800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:26267400-26267600	Enhancers	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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