Variant report

Variant	rs62409730
Chromosome Location	chr4:26272488-26272489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26271085..26272799-chr4:26320292..26322518,2	K562	blood:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11938012	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11942812	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13104736	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655052	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7680528	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26275000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
3	chr4:26267600-26274200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:26268800-26274600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:26269200-26274600	Weak transcription	Fetal Lung	lung
6	chr4:26269600-26275000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:26270400-26274400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr4:26270400-26274600	Weak transcription	Primary B cells from cord blood	blood
9	chr4:26270400-26274800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:26270400-26274800	Weak transcription	Adipose Nuclei	Adipose
11	chr4:26270400-26275000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:26270600-26273400	Weak transcription	Fetal Brain Male	brain
13	chr4:26270600-26274400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:26270600-26274400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:26270600-26274800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:26270800-26274400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:26270800-26274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:26270800-26274400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:26270800-26274400	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:26270800-26274400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:26270800-26274600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:26270800-26274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:26270800-26274800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:26270800-26275000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:26270800-26275000	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:26271400-26274400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:26271400-26274400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:26271800-26273000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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