Variant report

Variant	rs13105701
Chromosome Location	chr4:122188562-122188563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13123244	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13130731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34233504	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34844520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34982230	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35227342	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35869195	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35990210	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55897298	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66726443	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67148049	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67549192	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72668922	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	esv3343746	chr4:122188547-122188715	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122183800-122190200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:122184400-122190400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:122186200-122190000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:122186200-122190200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:122186200-122190200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:122186200-122190200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:122187200-122189000	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:122187200-122189000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:122187800-122190200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:122188200-122188600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:122188200-122188800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr4:122188400-122189000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:122188400-122189200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:122188400-122190200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:122188400-122192400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links