Variant report

Variant	rs35990210
Chromosome Location	chr4:122228771-122228772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11936805	0.86[ASN][1000 genomes]
rs13105701	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13123244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128635	1.00[ASN][1000 genomes]
rs13130731	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17051335	0.86[ASN][1000 genomes]
rs34233504	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34844520	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34982230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35227342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35869195	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55897298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66726443	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67148049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67549192	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668922	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664875	0.86[ASN][1000 genomes]
rs7677780	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122222000-122229400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:122228000-122228800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:122228000-122229600	Enhancers	GM12878-XiMat	blood
4	chr4:122228000-122230200	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:122228000-122230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:122228200-122229200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:122228200-122229200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr4:122228200-122229400	Enhancers	Primary T cells from cord blood	blood
9	chr4:122228200-122229600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:122228200-122229600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr4:122228200-122230200	Enhancers	NHEK	skin
12	chr4:122228600-122229200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:122228600-122229200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr4:122228600-122229600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr4:122228600-122229600	Enhancers	Hela-S3	cervix
16	chr4:122228600-122229600	Enhancers	HMEC	breast
17	chr4:122228600-122229800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:122228600-122230000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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