Variant report

Variant	rs13107210
Chromosome Location	chr4:147576420-147576421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147569955..147572256-chr4:147575383..147578342,2	K562	blood:
2	chr4:147569383..147571342-chr4:147575306..147577219,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10005616	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28478962	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3810843	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3827594	0.84[ASN][1000 genomes]
rs6537430	0.84[ASN][1000 genomes]
rs6856128	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830107	chr4:147452434-147635720	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv880238	chr4:147469559-147617963	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2753640	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2754145	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147575400-147576600	Bivalent/Poised TSS	NHDF-Ad	bronchial
2	chr4:147575400-147576800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:147575400-147576800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:147575400-147576800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
5	chr4:147575400-147576800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
6	chr4:147575400-147576800	Active TSS	Right Atrium	heart
7	chr4:147575400-147576800	Bivalent/Poised TSS	NH-A	brain
8	chr4:147575400-147577000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr4:147575400-147577000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr4:147575400-147577000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
11	chr4:147575600-147576600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:147575600-147576600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
13	chr4:147575600-147576600	Active TSS	Colonic Mucosa	Colon
14	chr4:147575600-147576600	Bivalent/Poised TSS	A549	lung
15	chr4:147575600-147576800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:147575600-147576800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:147575600-147576800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
18	chr4:147575600-147576800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:147575600-147576800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
20	chr4:147575600-147576800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr4:147575600-147576800	Active TSS	Right Ventricle	heart
22	chr4:147575600-147576800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
23	chr4:147575600-147576800	Bivalent/Poised TSS	NHLF	lung
24	chr4:147575600-147576800	Bivalent/Poised TSS	Osteobl	bone
25	chr4:147575600-147577000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
26	chr4:147575600-147577000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:147575600-147577000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
28	chr4:147575600-147577200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:147575800-147576600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:147575800-147576600	Bivalent Enhancer	Fetal Brain Male	brain
31	chr4:147575800-147576600	Bivalent/Poised TSS	Fetal Brain Female	brain
32	chr4:147575800-147576600	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr4:147575800-147576800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:147575800-147576800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:147575800-147576800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
36	chr4:147575800-147576800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
37	chr4:147575800-147576800	Bivalent/Poised TSS	HSMM	muscle
38	chr4:147575800-147577200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr4:147576000-147576600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:147576000-147576600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr4:147576000-147576600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr4:147576000-147576600	Bivalent/Poised TSS	Esophagus	oesophagus
43	chr4:147576000-147576600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
44	chr4:147576000-147576800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
45	chr4:147576000-147576800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
46	chr4:147576000-147576800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:147576000-147576800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
48	chr4:147576000-147576800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
49	chr4:147576000-147576800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
50	chr4:147576000-147576800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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