Variant report

Variant	rs6856128
Chromosome Location	chr4:147569663-147569664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147569383..147571342-chr4:147575306..147577219,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10005616	0.88[ASN][1000 genomes]
rs10011145	0.85[EUR][1000 genomes]
rs10024327	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13107210	0.84[ASN][1000 genomes]
rs13134193	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13152799	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28478962	0.88[ASN][1000 genomes]
rs34375288	0.88[EUR][1000 genomes]
rs3762842	0.88[EUR][1000 genomes]
rs3810843	0.88[ASN][1000 genomes]
rs3827594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537430	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830107	chr4:147452434-147635720	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv880238	chr4:147469559-147617963	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2753640	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2754145	chr4:147538395-147641395	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147568600-147569800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr4:147568600-147569800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr4:147568600-147569800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr4:147568600-147569800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr4:147568600-147569800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:147568600-147570200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr4:147568600-147570200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr4:147568800-147569800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr4:147568800-147569800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
10	chr4:147568800-147569800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
11	chr4:147568800-147569800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr4:147569000-147569800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:147569000-147569800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:147569000-147570200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr4:147569200-147569800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:147569400-147569800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:147569400-147569800	Bivalent Enhancer	Brain Hippocampus Middle	brain
18	chr4:147569600-147569800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr4:147569600-147569800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:147569600-147569800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:147569600-147570600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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