Variant report

Variant	rs13107296
Chromosome Location	chr4:110639502-110639503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004377	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11932526	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13127878	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1541373	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17512351	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2237056	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2301717	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3087494	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3181187	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5030535	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5030539	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6533448	0.95[ASN][1000 genomes]
rs6533449	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6533451	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6812043	0.95[ASN][1000 genomes]
rs6831917	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7674356	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7682236	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7694620	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9992400	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv595142	chr4:110609481-110656730	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110625000-110640200	Weak transcription	Aorta	Aorta
2	chr4:110625000-110641800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:110625000-110649200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:110625000-110649400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:110625000-110650400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:110625000-110650400	Weak transcription	Spleen	Spleen
7	chr4:110625200-110640600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:110625200-110642400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:110625200-110649200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:110625200-110649200	Weak transcription	NH-A	brain
11	chr4:110625200-110650200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:110625200-110650200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:110625400-110640400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:110625400-110643200	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:110625400-110648800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:110625400-110649000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:110625400-110649400	Weak transcription	HUVEC	blood vessel
18	chr4:110625800-110642800	Weak transcription	Colonic Mucosa	Colon
19	chr4:110625800-110643400	Weak transcription	Fetal Stomach	stomach
20	chr4:110625800-110644200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:110625800-110648600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:110625800-110648800	Weak transcription	Hela-S3	cervix
23	chr4:110625800-110649400	Weak transcription	Brain Substantia Nigra	brain
24	chr4:110626000-110649600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr4:110629000-110649200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:110633000-110649000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:110634000-110640600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:110634400-110649200	Weak transcription	Osteobl	bone
29	chr4:110634800-110649200	Weak transcription	Fetal Brain Male	brain
30	chr4:110635000-110650400	Weak transcription	Gastric	stomach
31	chr4:110635400-110650000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr4:110635600-110649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:110635800-110640000	Weak transcription	NHDF-Ad	bronchial
34	chr4:110635800-110647400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:110635800-110648800	Weak transcription	Ovary	ovary
36	chr4:110635800-110648800	Weak transcription	HMEC	breast
37	chr4:110635800-110649800	Weak transcription	Psoas Muscle	Psoas
38	chr4:110635800-110650000	Weak transcription	Right Ventricle	heart
39	chr4:110635800-110650400	Weak transcription	Lung	lung
40	chr4:110636000-110643400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:110636400-110643400	Weak transcription	Fetal Intestine Small	intestine
42	chr4:110637200-110639600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:110637200-110641200	Strong transcription	K562	blood
44	chr4:110638000-110649000	Weak transcription	HSMMtube	muscle
45	chr4:110638200-110643800	Weak transcription	Brain Germinal Matrix	brain
46	chr4:110638200-110644000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr4:110638200-110649400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr4:110638200-110649600	Weak transcription	Fetal Brain Female	brain
49	chr4:110638200-110649800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr4:110638200-110650000	Weak transcription	Brain Cingulate Gyrus	brain

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