Variant report

Variant	rs13127878
Chromosome Location	chr4:110642045-110642046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004377	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11932526	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13107296	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1541373	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17512351	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237056	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2301717	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3087494	0.94[ASN][1000 genomes]
rs3181187	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5030535	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5030539	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6533448	0.94[ASN][1000 genomes]
rs6533449	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6533451	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6812043	0.94[ASN][1000 genomes]
rs6831917	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7674356	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7682236	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7694620	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9992400	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv595142	chr4:110609481-110656730	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110625000-110649200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:110625000-110649400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:110625000-110650400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:110625000-110650400	Weak transcription	Spleen	Spleen
5	chr4:110625200-110642400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:110625200-110649200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:110625200-110649200	Weak transcription	NH-A	brain
8	chr4:110625200-110650200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:110625200-110650200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:110625400-110643200	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:110625400-110648800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:110625400-110649000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:110625400-110649400	Weak transcription	HUVEC	blood vessel
14	chr4:110625800-110642800	Weak transcription	Colonic Mucosa	Colon
15	chr4:110625800-110643400	Weak transcription	Fetal Stomach	stomach
16	chr4:110625800-110644200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:110625800-110648600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:110625800-110648800	Weak transcription	Hela-S3	cervix
19	chr4:110625800-110649400	Weak transcription	Brain Substantia Nigra	brain
20	chr4:110626000-110649600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr4:110629000-110649200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:110633000-110649000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:110634400-110649200	Weak transcription	Osteobl	bone
24	chr4:110634800-110649200	Weak transcription	Fetal Brain Male	brain
25	chr4:110635000-110650400	Weak transcription	Gastric	stomach
26	chr4:110635400-110650000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr4:110635600-110649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:110635800-110647400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:110635800-110648800	Weak transcription	Ovary	ovary
30	chr4:110635800-110648800	Weak transcription	HMEC	breast
31	chr4:110635800-110649800	Weak transcription	Psoas Muscle	Psoas
32	chr4:110635800-110650000	Weak transcription	Right Ventricle	heart
33	chr4:110635800-110650400	Weak transcription	Lung	lung
34	chr4:110636000-110643400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:110636400-110643400	Weak transcription	Fetal Intestine Small	intestine
36	chr4:110638000-110649000	Weak transcription	HSMMtube	muscle
37	chr4:110638200-110643800	Weak transcription	Brain Germinal Matrix	brain
38	chr4:110638200-110644000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:110638200-110649400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr4:110638200-110649600	Weak transcription	Fetal Brain Female	brain
41	chr4:110638200-110649800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr4:110638200-110650000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr4:110638200-110650200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr4:110638400-110643200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:110638400-110643200	Weak transcription	Fetal Muscle Leg	muscle
46	chr4:110638400-110649000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:110638400-110649200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:110638400-110649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:110638400-110649200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:110638400-110649400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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