Variant report

Variant	rs13108005
Chromosome Location	chr4:106888075-106888076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106887456..106889900-chr4:106890569..106892940,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11097905	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11945032	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13135336	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036415	0.95[CEU][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28373108	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28489230	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4597836	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57388634	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6533227	1.00[ASN][1000 genomes]
rs6817700	0.88[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7680832	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
2	chr4:106868400-106892000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:106872200-106888400	Weak transcription	Lung	lung
4	chr4:106873000-106888400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:106878000-106888400	Weak transcription	Ovary	ovary
6	chr4:106879000-106888200	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:106879200-106888200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:106881000-106890400	Weak transcription	Small Intestine	intestine
9	chr4:106884800-106888400	Weak transcription	Right Atrium	heart
10	chr4:106885000-106888200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:106885400-106888200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:106885400-106888400	Weak transcription	Left Ventricle	heart
13	chr4:106885400-106888400	Weak transcription	Right Ventricle	heart
14	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
15	chr4:106885600-106891600	Weak transcription	Fetal Intestine Small	intestine
16	chr4:106885600-106894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:106886600-106888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:106886600-106888200	Enhancers	Hela-S3	cervix
19	chr4:106886600-106888600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:106886600-106888600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:106886600-106888600	Enhancers	Adipose Nuclei	Adipose
22	chr4:106886600-106888600	Enhancers	K562	blood
23	chr4:106886600-106888800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:106886600-106888800	Enhancers	HSMMtube	muscle
25	chr4:106886600-106889200	Enhancers	Fetal Heart	heart
26	chr4:106886600-106894600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:106886800-106888600	Enhancers	Placenta	Placenta
28	chr4:106886800-106888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr4:106886800-106889200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr4:106887000-106888600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr4:106887000-106888600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr4:106887000-106888800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr4:106887000-106888800	Enhancers	Psoas Muscle	Psoas
34	chr4:106887200-106888800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:106887200-106889200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:106887200-106889200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr4:106887200-106889200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr4:106887200-106890400	Weak transcription	Spleen	Spleen
39	chr4:106887200-106892200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:106887400-106888400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:106887600-106888400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:106887600-106890000	Weak transcription	Fetal Intestine Large	intestine
43	chr4:106887800-106888400	Enhancers	NHDF-Ad	bronchial
44	chr4:106887800-106888600	Enhancers	Fetal Stomach	stomach
45	chr4:106887800-106889400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr4:106888000-106888200	Flanking Active TSS	Fetal Kidney	kidney
47	chr4:106888000-106888600	Enhancers	H1 Cell Line	embryonic stem cell
48	chr4:106888000-106888800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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