Variant report

Variant	rs7680832
Chromosome Location	chr4:106887163-106887164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106871716..106874028-chr4:106885869..106887755,2	MCF-7	breast:
2	chr4:106880865..106883226-chr4:106885704..106887688,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13108005	0.94[ASN][1000 genomes]
rs13135336	0.94[ASN][1000 genomes]
rs4597836	0.90[ASN][1000 genomes]
rs6533227	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6817700	0.94[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7680832	NHEDC2	cis	cerebellum	SCAN
rs7680832	RRH	cis	cerebellum	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
2	chr4:106868400-106892000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:106872200-106888400	Weak transcription	Lung	lung
4	chr4:106873000-106888400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:106878000-106888400	Weak transcription	Ovary	ovary
6	chr4:106879000-106887200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:106879000-106888200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:106879200-106888200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:106881000-106890400	Weak transcription	Small Intestine	intestine
10	chr4:106884800-106888400	Weak transcription	Right Atrium	heart
11	chr4:106885000-106888200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:106885400-106887800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:106885400-106888200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:106885400-106888400	Weak transcription	Left Ventricle	heart
15	chr4:106885400-106888400	Weak transcription	Right Ventricle	heart
16	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
17	chr4:106885600-106891600	Weak transcription	Fetal Intestine Small	intestine
18	chr4:106885600-106894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:106886400-106887200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:106886400-106887200	Flanking Active TSS	NHEK	skin
21	chr4:106886600-106887200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:106886600-106887200	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:106886600-106887200	Enhancers	A549	lung
24	chr4:106886600-106887400	Enhancers	HMEC	breast
25	chr4:106886600-106887400	Enhancers	NHDF-Ad	bronchial
26	chr4:106886600-106887600	Enhancers	Fetal Intestine Large	intestine
27	chr4:106886600-106888000	Enhancers	Fetal Kidney	kidney
28	chr4:106886600-106888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:106886600-106888200	Enhancers	Hela-S3	cervix
30	chr4:106886600-106888600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:106886600-106888600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:106886600-106888600	Enhancers	Adipose Nuclei	Adipose
33	chr4:106886600-106888600	Enhancers	K562	blood
34	chr4:106886600-106888800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:106886600-106888800	Enhancers	HSMMtube	muscle
36	chr4:106886600-106889200	Enhancers	Fetal Heart	heart
37	chr4:106886600-106894600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr4:106886800-106887200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:106886800-106887600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr4:106886800-106887600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:106886800-106887800	Enhancers	HSMM	muscle
42	chr4:106886800-106888600	Enhancers	Placenta	Placenta
43	chr4:106886800-106888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr4:106886800-106889200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr4:106887000-106887200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:106887000-106887200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:106887000-106887200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr4:106887000-106887200	Enhancers	Spleen	Spleen
49	chr4:106887000-106887400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:106887000-106887400	Enhancers	Osteobl	bone

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