Variant report

Variant	rs13110736
Chromosome Location	chr4:74709859-74709860
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:74709837-74710510	MCF10A-Er-Src	breast:	n/a	chr4:74710074-74710084 chr4:74710184-74710196 chr4:74710074-74710084 chr4:74710212-74710220 chr4:74710212-74710219

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74707446..74710155-chr4:74710214..74713397,3	K562	blood:
2	chr4:74704652..74707248-chr4:74709226..74713133,3	K562	blood:

Variant related genes	Relation type
PPBPP1	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11930978	0.87[EUR][1000 genomes]
rs12500975	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13148728	0.96[EUR][1000 genomes]
rs1957078	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4694639	0.86[ASN][1000 genomes]
rs4694641	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62312418	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74706600-74719000	Weak transcription	Pancreas	Pancrea
2	chr4:74707000-74710800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:74707000-74711000	Enhancers	NHEK	skin
4	chr4:74707800-74712200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:74708200-74710800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:74708400-74710800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:74708600-74710400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:74708600-74710800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:74708600-74711000	Enhancers	HUVEC	blood vessel
10	chr4:74708800-74710800	Enhancers	Hela-S3	cervix
11	chr4:74708800-74710800	Enhancers	HSMM	muscle
12	chr4:74708800-74711400	Enhancers	HMEC	breast
13	chr4:74709000-74710400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:74709000-74710400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:74709000-74710400	Enhancers	NHLF	lung
16	chr4:74709000-74710800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:74709000-74710800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:74709000-74710800	Enhancers	NHDF-Ad	bronchial
19	chr4:74709000-74710800	Enhancers	Osteobl	bone
20	chr4:74709400-74710200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:74709600-74710000	Weak transcription	NH-A	brain
22	chr4:74709800-74710800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr4:74709800-74711400	Enhancers	Primary monocytes fromperipheralblood	blood

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