Variant report

Variant	rs1957078
Chromosome Location	chr4:74704582-74704583
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11930978	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12500975	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13110736	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13148728	0.94[EUR][1000 genomes]
rs4694639	0.89[ASN][1000 genomes]
rs4694641	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62312418	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74703000-74705200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:74703000-74706400	Weak transcription	Pancreas	Pancrea
3	chr4:74703000-74708200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:74703000-74708800	Weak transcription	HMEC	breast
5	chr4:74703200-74706800	Weak transcription	HUVEC	blood vessel
6	chr4:74703200-74707000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:74703400-74707000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:74703600-74707000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:74703600-74707000	Weak transcription	NHEK	skin
10	chr4:74703600-74707000	Weak transcription	Osteobl	bone
11	chr4:74703600-74708400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:74703600-74709000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:74703800-74707000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:74703800-74709000	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links