Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84769957..84771677-chr4:84773440..84775148,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10000017	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10003040	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10011437	0.86[EUR][1000 genomes]
rs10025543	0.86[EUR][1000 genomes]
rs10026607	0.85[EUR][1000 genomes]
rs10027658	0.84[EUR][1000 genomes]
rs10030289	0.83[EUR][1000 genomes]
rs10516705	0.83[EUR][1000 genomes]
rs10516706	0.83[EUR][1000 genomes]
rs11731734	0.85[EUR][1000 genomes]
rs12648690	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12651425	0.84[EUR][1000 genomes]
rs13126755	0.84[EUR][1000 genomes]
rs13130476	0.81[EUR][1000 genomes]
rs13138168	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13140768	0.83[EUR][1000 genomes]
rs1488657	0.82[EUR][1000 genomes]
rs1505786	0.84[EUR][1000 genomes]
rs1505792	0.85[EUR][1000 genomes]
rs17007624	0.83[EUR][1000 genomes]
rs1847823	0.83[EUR][1000 genomes]
rs1906578	0.83[EUR][1000 genomes]
rs2009469	0.81[EUR][1000 genomes]
rs28394381	0.84[EUR][1000 genomes]
rs28780983	0.83[EUR][1000 genomes]
rs34196281	0.84[EUR][1000 genomes]
rs34854529	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4524375	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84760000-84772400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:84768200-84771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:84769200-84771600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:84769800-84772200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:84770000-84771600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:84770000-84771800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:84770200-84771800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:84770400-84771600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:84770400-84773000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr4:84770600-84771600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:84770600-84771600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:84771400-84771800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:84771400-84772000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:84771400-84774600	Enhancers	H1 Cell Line	embryonic stem cell

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