Variant report
| Variant | rs1488657 |
|---|---|
| Chromosome Location | chr4:84797332-84797333 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10000017 | 0.89[EUR][1000 genomes] |
| rs10003040 | 0.94[EUR][1000 genomes] |
| rs10011437 | 0.95[EUR][1000 genomes] |
| rs10025543 | 0.95[EUR][1000 genomes] |
| rs10026607 | 0.95[EUR][1000 genomes] |
| rs10027658 | 0.97[EUR][1000 genomes] |
| rs10030289 | 0.97[EUR][1000 genomes] |
| rs10516705 | 0.97[EUR][1000 genomes] |
| rs10516706 | 0.97[EUR][1000 genomes] |
| rs11731734 | 0.93[EUR][1000 genomes] |
| rs12651425 | 0.97[EUR][1000 genomes] |
| rs13115377 | 0.82[EUR][1000 genomes] |
| rs13126755 | 0.97[EUR][1000 genomes] |
| rs13130476 | 0.95[EUR][1000 genomes] |
| rs13140768 | 0.97[EUR][1000 genomes] |
| rs1505786 | 0.97[EUR][1000 genomes] |
| rs1505792 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17007624 | 0.97[EUR][1000 genomes] |
| rs1847823 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1906578 | 0.97[EUR][1000 genomes] |
| rs2009469 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28394381 | 0.97[EUR][1000 genomes] |
| rs28451242 | 0.92[EUR][1000 genomes] |
| rs28780983 | 0.97[EUR][1000 genomes] |
| rs34196281 | 0.97[EUR][1000 genomes] |
| rs4524375 | 0.97[EUR][1000 genomes] |
| rs5012041 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879512 | chr4:84374692-85090749 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010009 | chr4:84469896-84882528 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv879513 | chr4:84612373-84905452 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1846043 | chr4:84792366-84829877 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:84797000-84797800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
