Variant report

Variant	rs13116912
Chromosome Location	chr4:111172497-111172498
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13137555	1.00[EUR][1000 genomes]
rs13144542	1.00[EUR][1000 genomes]
rs13340294	0.89[ASN][1000 genomes]
rs28374388	1.00[EUR][1000 genomes]
rs28805390	0.89[ASN][1000 genomes]
rs6858863	1.00[EUR][1000 genomes]
rs71603062	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672908	1.00[EUR][1000 genomes]
rs7697282	1.00[EUR][1000 genomes]
rs7699425	1.00[EUR][1000 genomes]
rs9992732	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs9993337	0.90[AMR][1000 genomes]
rs9996503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111171600-111173000	Weak transcription	K562	blood
2	chr4:111171800-111173600	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links