Variant report

Variant	rs71603062
Chromosome Location	chr4:111170662-111170663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13116912	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137555	1.00[EUR][1000 genomes]
rs13144542	1.00[EUR][1000 genomes]
rs13340294	0.89[ASN][1000 genomes]
rs28374388	1.00[EUR][1000 genomes]
rs28805390	0.89[ASN][1000 genomes]
rs6858863	1.00[EUR][1000 genomes]
rs7672908	1.00[EUR][1000 genomes]
rs7697282	1.00[EUR][1000 genomes]
rs7699425	1.00[EUR][1000 genomes]
rs9992732	0.89[ASN][1000 genomes]
rs9993337	0.81[AMR][1000 genomes]
rs9996503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111167000-111170800	Weak transcription	Osteobl	bone
2	chr4:111167400-111171200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:111170600-111171000	Enhancers	Liver	Liver
4	chr4:111170600-111171600	Enhancers	K562	blood
5	chr4:111170600-111171800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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