Variant report

Variant	rs13116956
Chromosome Location	chr4:55825378-55825379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1458820	1.00[ASN][1000 genomes]
rs17774325	1.00[ASN][1000 genomes]
rs57367677	1.00[ASN][1000 genomes]
rs61229377	1.00[ASN][1000 genomes]
rs73236105	1.00[ASN][1000 genomes]
rs73236112	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55823800-55827800	Enhancers	Primary T cells from cord blood	blood
3	chr4:55824000-55825400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:55824200-55825600	Enhancers	NHDF-Ad	bronchial
5	chr4:55824200-55826600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:55824200-55827200	Enhancers	NH-A	brain
7	chr4:55824200-55827600	Enhancers	NHLF	lung
8	chr4:55824200-55828000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:55824400-55826600	Enhancers	HSMMtube	muscle
10	chr4:55824400-55827600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:55824600-55825600	Weak transcription	Placenta	Placenta
12	chr4:55824600-55826400	Enhancers	Osteobl	bone
13	chr4:55824600-55827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:55824600-55827200	Enhancers	HSMM	muscle
15	chr4:55824800-55826000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:55824800-55826800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:55824800-55827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:55825000-55825400	Weak transcription	Fetal Heart	heart
19	chr4:55825000-55827000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:55825000-55827000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:55825000-55827800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:55825200-55826200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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