Variant report

Variant	rs1458820
Chromosome Location	chr4:55990353-55990354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDR-3	chr4:55988831-55992348	ucscGeneNc_uc003hay_2

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13116956	1.00[ASN][1000 genomes]
rs17774325	1.00[ASN][1000 genomes]
rs73236105	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236112	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55954400-55990400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:55972000-55990800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:55985000-55990600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:55986800-55991000	Flanking Active TSS	HUVEC	blood vessel
5	chr4:55986800-55991400	Active TSS	Right Atrium	heart
6	chr4:55987400-55990600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
7	chr4:55988000-55992400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:55988000-55992400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr4:55988600-55990400	Active TSS	Liver	Liver
10	chr4:55988600-55990400	Active TSS	Left Ventricle	heart
11	chr4:55988600-55990600	Active TSS	Fetal Stomach	stomach
12	chr4:55988600-55990800	Active TSS	Psoas Muscle	Psoas
13	chr4:55988600-55992600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr4:55988800-55990600	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr4:55988800-55990800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:55989000-55990400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr4:55989000-55990800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
18	chr4:55989000-55991000	Active TSS	Right Ventricle	heart
19	chr4:55989400-55992400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr4:55989800-55990400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
21	chr4:55989800-55992200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
22	chr4:55989800-55992800	Bivalent/Poised TSS	Fetal Kidney	kidney
23	chr4:55990000-55990400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:55990000-55990400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr4:55990000-55990400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:55990000-55990400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:55990000-55990600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:55990000-55990600	Active TSS	Brain Anterior Caudate	brain
29	chr4:55990000-55990600	Active TSS	Esophagus	oesophagus
30	chr4:55990000-55990600	Active TSS	Fetal Muscle Trunk	muscle
31	chr4:55990000-55990600	Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr4:55990000-55990800	Active TSS	Brain Hippocampus Middle	brain
33	chr4:55990000-55990800	Active TSS	Gastric	stomach
34	chr4:55990000-55991000	Bivalent/Poised TSS	Fetal Lung	lung
35	chr4:55990000-55991200	Active TSS	Lung	lung
36	chr4:55990000-55991400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:55990000-55991600	Bivalent/Poised TSS	Adipose Nuclei	Adipose
38	chr4:55990000-55992400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr4:55990000-55992400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:55990000-55992400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:55990200-55990600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
42	chr4:55990200-55990600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr4:55990200-55990800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
44	chr4:55990200-55991000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr4:55990200-55991000	Bivalent/Poised TSS	Placenta	Placenta
46	chr4:55990200-55991200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr4:55990200-55992400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr4:55990200-55992400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
49	chr4:55990200-55992600	Bivalent/Poised TSS	Ovary	ovary

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