Variant report

Variant	rs13117333
Chromosome Location	chr4:16039966-16039967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13140264	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1400772	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28711908	0.84[ASN][1000 genomes]
rs35073197	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35549063	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885289	0.93[CEU][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs950946	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16025600-16045000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:16025600-16050600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:16025800-16057600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:16026400-16066600	Weak transcription	Colonic Mucosa	Colon
5	chr4:16026400-16066600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:16031200-16040000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:16034400-16050400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:16034400-16072200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:16035000-16042800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:16035000-16044800	Weak transcription	Fetal Brain Female	brain
11	chr4:16035200-16050800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:16035200-16050800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:16035600-16040000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:16035800-16040000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:16036400-16057800	Weak transcription	Fetal Intestine Small	intestine
16	chr4:16036600-16041600	Weak transcription	Fetal Heart	heart
17	chr4:16036600-16042000	Weak transcription	Fetal Brain Male	brain
18	chr4:16036600-16045200	Weak transcription	Pancreas	Pancrea
19	chr4:16036800-16045200	Weak transcription	Stomach Mucosa	stomach
20	chr4:16037200-16040000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:16038200-16040000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:16038800-16045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:16039200-16040000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:16039200-16041400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:16039200-16044800	Weak transcription	Fetal Stomach	stomach
26	chr4:16039600-16040400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr4:16039600-16041600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr4:16039600-16041600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:16039800-16040000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr4:16039800-16040000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr4:16039800-16041400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:16039800-16041400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr4:16039800-16041400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:16039800-16041600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:16039800-16041600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:16039800-16041600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:16039800-16044800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:16039800-16044800	Weak transcription	Placenta	Placenta
39	chr4:16039800-16045000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr4:16039800-16045000	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:16039800-16062800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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