Variant report

Variant	rs885289
Chromosome Location	chr4:16031812-16031813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16031145..16031923-chr4:16198209..16198930,2	MCF-7	breast:
2	chr4:16021990..16024405-chr4:16030787..16033015,2	K562	blood:

Variant related genes	Relation type
ENSG00000169762	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13107837	0.85[ASN][1000 genomes]
rs13117333	0.93[CEU][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13128332	0.85[ASN][1000 genomes]
rs13140264	0.94[CEU][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400770	0.85[ASN][1000 genomes]
rs1400772	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35073197	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549063	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs950946	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15988400-16033800	Weak transcription	Pancreas	Pancrea
2	chr4:16008000-16033000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:16009200-16033200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:16010800-16038600	Weak transcription	Placenta	Placenta
5	chr4:16023600-16032400	Weak transcription	Fetal Brain Male	brain
6	chr4:16023600-16033600	Weak transcription	Fetal Brain Female	brain
7	chr4:16025600-16033800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:16025600-16035600	Weak transcription	Fetal Intestine Small	intestine
9	chr4:16025600-16045000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:16025600-16050600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:16025800-16036000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:16025800-16057600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:16026400-16066600	Weak transcription	Colonic Mucosa	Colon
14	chr4:16026400-16066600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:16027000-16034000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:16027200-16039000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:16027600-16036000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:16028400-16033800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:16028600-16033200	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:16030200-16032200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:16030400-16036000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr4:16030400-16039000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:16030600-16032200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:16030600-16032600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr4:16030800-16035000	Enhancers	Primary hematopoietic stem cells	blood
26	chr4:16031000-16032400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:16031000-16034600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr4:16031200-16032800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:16031200-16033200	Weak transcription	Fetal Kidney	kidney
30	chr4:16031200-16033800	Weak transcription	Fetal Stomach	stomach
31	chr4:16031200-16034200	Weak transcription	Fetal Heart	heart
32	chr4:16031200-16035200	Weak transcription	Liver	Liver
33	chr4:16031200-16035600	Weak transcription	Aorta	Aorta
34	chr4:16031200-16035800	Weak transcription	NHDF-Ad	bronchial
35	chr4:16031200-16040000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:16031400-16032000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:16031400-16033200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:16031400-16033200	Weak transcription	HUVEC	blood vessel
39	chr4:16031400-16033800	Weak transcription	NH-A	brain
40	chr4:16031600-16032000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:16031600-16032800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:16031600-16032800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr4:16031600-16032800	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:16031600-16033200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr4:16031600-16033200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:16031600-16033200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr4:16031600-16033200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr4:16031600-16033200	Weak transcription	Adipose Nuclei	Adipose
49	chr4:16031600-16034000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:16031600-16034600	Weak transcription	Hela-S3	cervix

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