Variant report

Variant	rs13117783
Chromosome Location	chr4:54318065-54318066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10028142	0.83[AFR][1000 genomes]
rs11722866	0.83[AFR][1000 genomes]
rs11725230	0.83[AFR][1000 genomes]
rs17520800	0.83[AFR][1000 genomes]
rs28414913	0.81[AFR][1000 genomes]
rs3811785	0.83[AFR][1000 genomes]
rs6833442	0.82[AFR][1000 genomes]
rs6833766	0.83[AFR][1000 genomes]
rs7689981	0.83[AFR][1000 genomes]
rs7690908	0.81[AFR][1000 genomes]
rs7691578	0.83[AFR][1000 genomes]
rs7698792	0.83[AFR][1000 genomes]
rs9995284	0.84[AFR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
2	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
3	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
4	chr4:54256600-54319200	Weak transcription	Gastric	stomach
5	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:54268400-54319800	Weak transcription	A549	lung
7	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
8	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:54276600-54319000	Weak transcription	Lung	lung
11	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
15	chr4:54294400-54320600	Weak transcription	HSMMtube	muscle
16	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
17	chr4:54295600-54319800	Weak transcription	Brain Anterior Caudate	brain
18	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
19	chr4:54296800-54320400	Weak transcription	Brain Germinal Matrix	brain
20	chr4:54297400-54319200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:54297400-54319200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:54297400-54319200	Weak transcription	NH-A	brain
23	chr4:54297600-54326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:54297600-54329600	Strong transcription	Dnd41	blood
25	chr4:54298600-54329600	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:54302800-54320600	Weak transcription	Psoas Muscle	Psoas
27	chr4:54305000-54324600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:54311000-54319800	Weak transcription	Brain Angular Gyrus	brain
29	chr4:54311000-54320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:54311200-54319200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:54311400-54319000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr4:54311400-54319000	Weak transcription	Fetal Kidney	kidney
33	chr4:54311400-54320800	Weak transcription	Right Ventricle	heart
34	chr4:54311600-54318200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:54311600-54319200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:54311600-54319800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr4:54311800-54318600	Weak transcription	GM12878-XiMat	blood
38	chr4:54311800-54318800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:54312000-54318200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:54312000-54318600	Weak transcription	Fetal Thymus	thymus
41	chr4:54312000-54319000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:54312000-54319000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr4:54312000-54319000	Weak transcription	Spleen	Spleen
44	chr4:54312000-54319000	Weak transcription	HUVEC	blood vessel
45	chr4:54312000-54319000	Weak transcription	NHLF	lung
46	chr4:54312000-54319600	Weak transcription	Fetal Brain Female	brain
47	chr4:54312000-54321200	Weak transcription	Small Intestine	intestine
48	chr4:54312200-54318200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:54312200-54318200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:54312200-54318600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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