Variant report

Variant	rs7690908
Chromosome Location	chr4:54339423-54339424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10000746	0.82[EUR][1000 genomes]
rs10001201	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10005424	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10007903	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10011259	0.82[EUR][1000 genomes]
rs10011394	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10017903	0.82[EUR][1000 genomes]
rs10021541	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10028142	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10032903	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1021099	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11133276	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11723755	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11725230	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731499	0.82[EUR][1000 genomes]
rs11734039	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11734681	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11947256	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507563	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12507739	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12508701	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12511088	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12511253	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12642403	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12649718	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13117783	0.81[AFR][1000 genomes]
rs13150384	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1471597	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1481819	0.82[EUR][1000 genomes]
rs1481824	0.82[EUR][1000 genomes]
rs1531748	0.82[EUR][1000 genomes]
rs17082782	0.86[EUR][1000 genomes]
rs17082893	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17082923	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17520800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090117	0.86[EUR][1000 genomes]
rs2271554	0.82[EUR][1000 genomes]
rs2271558	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2271559	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2412447	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2412488	0.88[EUR][1000 genomes]
rs28414913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459503	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35089837	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35499169	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35978987	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36011216	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3765158	0.88[EUR][1000 genomes]
rs3811782	0.82[EUR][1000 genomes]
rs3811785	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4864759	0.82[EUR][1000 genomes]
rs4864760	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4864767	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56998298	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57297394	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6554100	0.82[EUR][1000 genomes]
rs6554104	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6554105	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6554106	0.82[EUR][1000 genomes]
rs6818788	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6822201	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6825364	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6827269	0.88[EUR][1000 genomes]
rs6828559	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6832626	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6833442	0.96[AFR][1000 genomes]
rs6833766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6834934	0.82[EUR][1000 genomes]
rs6838260	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6839922	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6840343	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6840530	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6843529	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6848887	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6857024	0.82[EUR][1000 genomes]
rs7655975	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7682199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686177	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7686876	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7688853	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7691578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7691892	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7697622	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7698792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs931181	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs931182	0.82[EUR][1000 genomes]
rs9312639	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs980987	0.81[EUR][1000 genomes]
rs9995284	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9996883	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516916	chr4:54331706-54341346	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54342000	Weak transcription	Pancreas	Pancrea
2	chr4:54320000-54353200	Weak transcription	Gastric	stomach
3	chr4:54321400-54341800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:54321800-54339800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:54327600-54347800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:54327800-54341800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
10	chr4:54328600-54339600	Weak transcription	Fetal Brain Female	brain
11	chr4:54329600-54341600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:54329600-54341800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:54329600-54342000	Weak transcription	NH-A	brain
14	chr4:54329600-54351000	Weak transcription	Adipose Nuclei	Adipose
15	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
16	chr4:54329800-54341600	Weak transcription	NHDF-Ad	bronchial
17	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
18	chr4:54330200-54340800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:54330200-54341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:54332000-54341800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:54332000-54342400	Weak transcription	HSMM	muscle
22	chr4:54333000-54342800	Weak transcription	Esophagus	oesophagus
23	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
24	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:54333600-54340200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:54333600-54340600	Weak transcription	Fetal Intestine Small	intestine
27	chr4:54333600-54342600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:54333600-54342800	Weak transcription	Fetal Stomach	stomach
29	chr4:54336400-54342800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:54338000-54341400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:54338400-54347400	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:54339000-54340400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:54339000-54340600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:54339200-54341200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:54339200-54343400	Strong transcription	Liver	Liver
36	chr4:54339400-54339800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr4:54339400-54340400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr4:54339400-54342400	Strong transcription	Placenta	Placenta
39	chr4:54339400-54343200	Strong transcription	Fetal Intestine Large	intestine

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