Variant report

Variant	rs4864759
Chromosome Location	chr4:54259408-54259409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54231373..54233173-chr4:54258166..54260670,2	K562	blood:
2	chr4:54259354..54262272-chr4:54263362..54265634,3	K562	blood:
3	chr4:54256491..54258052-chr4:54258208..54260279,2	K562	blood:
4	chr4:54253675..54256529-chr4:54257967..54261148,3	K562	blood:
5	chr4:54257963..54259496-chr4:54266407..54268667,2	K562	blood:

Variant related genes	Relation type
ENSG00000184178	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10000746	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10001201	0.88[EUR][1000 genomes]
rs10007903	0.81[EUR][1000 genomes]
rs10011259	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10017903	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10021541	0.87[EUR][1000 genomes]
rs10028142	0.82[EUR][1000 genomes]
rs1021099	0.87[EUR][1000 genomes]
rs11133266	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11722866	0.83[EUR][1000 genomes]
rs11723755	0.83[EUR][1000 genomes]
rs11725230	0.83[EUR][1000 genomes]
rs11731499	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734039	0.87[EUR][1000 genomes]
rs11947256	0.87[EUR][1000 genomes]
rs12649718	0.88[EUR][1000 genomes]
rs1471597	0.87[EUR][1000 genomes]
rs1481819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481824	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531748	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1600795	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17082782	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17520800	0.82[EUR][1000 genomes]
rs2090117	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2271554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412447	0.87[EUR][1000 genomes]
rs2412488	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28414913	0.82[EUR][1000 genomes]
rs28579268	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35499169	0.86[EUR][1000 genomes]
rs3765158	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3811782	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811785	0.81[EUR][1000 genomes]
rs4864760	0.87[EUR][1000 genomes]
rs56998298	0.87[EUR][1000 genomes]
rs6554100	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554104	0.87[EUR][1000 genomes]
rs6554105	0.87[EUR][1000 genomes]
rs6554106	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6825364	0.81[EUR][1000 genomes]
rs6827269	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6828559	0.82[EUR][1000 genomes]
rs6833766	0.83[EUR][1000 genomes]
rs6834934	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848887	0.88[EUR][1000 genomes]
rs6852884	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857024	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857869	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7655975	0.87[EUR][1000 genomes]
rs7686876	0.88[EUR][1000 genomes]
rs7689981	0.82[EUR][1000 genomes]
rs7690908	0.82[EUR][1000 genomes]
rs7691578	0.82[EUR][1000 genomes]
rs7697622	0.88[EUR][1000 genomes]
rs7698792	0.81[EUR][1000 genomes]
rs931181	0.88[EUR][1000 genomes]
rs931182	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9312639	0.81[EUR][1000 genomes]
rs980987	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9995284	0.80[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
3	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
4	chr4:54245000-54271400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
6	chr4:54245600-54269600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:54245600-54270200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:54246000-54270200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:54246000-54270200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:54246200-54276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
12	chr4:54246400-54259800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:54246400-54259800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr4:54246600-54270200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
16	chr4:54247400-54260800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:54247400-54270200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr4:54247600-54262200	Strong transcription	K562	blood
19	chr4:54247600-54269800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:54247600-54270200	Strong transcription	Dnd41	blood
21	chr4:54248000-54270000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr4:54248200-54259600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:54248200-54259600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:54248200-54270000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:54248200-54270200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:54248400-54259600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:54248400-54259600	Strong transcription	Fetal Lung	lung
28	chr4:54248400-54260800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:54248400-54269400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:54248400-54269600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:54248400-54269800	Strong transcription	Fetal Thymus	thymus
32	chr4:54248400-54270000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:54248400-54270000	Strong transcription	NHDF-Ad	bronchial
34	chr4:54248400-54270200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr4:54248400-54270200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr4:54248600-54259600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:54248600-54259600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:54248600-54259600	Strong transcription	Liver	Liver
39	chr4:54249000-54270200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr4:54249400-54259600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr4:54249400-54259800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr4:54250600-54259800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:54250800-54269200	Strong transcription	Primary B cells from cord blood	blood
44	chr4:54252400-54259600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:54252800-54270200	Strong transcription	Primary T cells from cord blood	blood
46	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
47	chr4:54253600-54293400	Weak transcription	HSMMtube	muscle
48	chr4:54255200-54260600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr4:54256600-54262000	Weak transcription	Fetal Intestine Small	intestine

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