Variant report

Variant	rs35499169
Chromosome Location	chr4:54271617-54271618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10000746	0.86[EUR][1000 genomes]
rs10001201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10005424	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10007903	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10011259	0.86[EUR][1000 genomes]
rs10011394	0.81[ASN][1000 genomes]
rs10017903	0.86[EUR][1000 genomes]
rs10021541	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028142	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10032903	0.81[ASN][1000 genomes]
rs1021099	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11133266	0.81[EUR][1000 genomes]
rs11722866	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11723755	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11725230	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11731499	0.86[EUR][1000 genomes]
rs11734039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734681	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11947256	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12507739	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12508701	0.81[ASN][1000 genomes]
rs12649718	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12651390	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13150384	0.81[ASN][1000 genomes]
rs1471597	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481819	0.86[EUR][1000 genomes]
rs1481824	0.87[EUR][1000 genomes]
rs1531748	0.86[EUR][1000 genomes]
rs1600795	0.82[EUR][1000 genomes]
rs17082782	0.82[EUR][1000 genomes]
rs17082893	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17520800	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2090117	0.82[EUR][1000 genomes]
rs2271554	0.86[EUR][1000 genomes]
rs2412447	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412488	0.81[EUR][1000 genomes]
rs28414913	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28459503	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28579268	0.86[EUR][1000 genomes]
rs35089837	0.81[ASN][1000 genomes]
rs36011216	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3765158	0.81[EUR][1000 genomes]
rs3811782	0.87[EUR][1000 genomes]
rs3811785	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4864759	0.86[EUR][1000 genomes]
rs4864760	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56998298	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6554100	0.87[EUR][1000 genomes]
rs6554104	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554105	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6554106	0.86[EUR][1000 genomes]
rs6818788	0.81[ASN][1000 genomes]
rs6825364	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6827269	0.81[EUR][1000 genomes]
rs6828559	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6833442	0.92[AFR][1000 genomes]
rs6833766	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6834934	0.87[EUR][1000 genomes]
rs6838260	0.81[ASN][1000 genomes]
rs6843529	0.80[ASN][1000 genomes]
rs6848887	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852884	0.82[EUR][1000 genomes]
rs6857024	0.87[EUR][1000 genomes]
rs6857869	0.87[EUR][1000 genomes]
rs7655975	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682199	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7686177	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7686876	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688853	0.81[ASN][1000 genomes]
rs7689981	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7690908	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7691578	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7697622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698792	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs931181	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs931182	0.86[EUR][1000 genomes]
rs9312639	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs980987	0.85[EUR][1000 genomes]
rs9995284	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9996883	0.81[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54272800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
3	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
4	chr4:54245400-54279400	Weak transcription	Right Ventricle	heart
5	chr4:54246200-54276200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
7	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
8	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
9	chr4:54253600-54293400	Weak transcription	HSMMtube	muscle
10	chr4:54256400-54294200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
12	chr4:54256600-54319200	Weak transcription	Gastric	stomach
13	chr4:54256800-54271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:54256800-54275400	Weak transcription	Lung	lung
15	chr4:54256800-54275600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:54256800-54279000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:54257600-54296000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:54259400-54272000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:54263800-54295000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:54264000-54279600	Weak transcription	Fetal Heart	heart
21	chr4:54264400-54294800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr4:54266400-54293600	Weak transcription	NHEK	skin
23	chr4:54266600-54279400	Weak transcription	Brain Angular Gyrus	brain
24	chr4:54266800-54275600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr4:54267200-54294600	Weak transcription	Hela-S3	cervix
26	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
27	chr4:54268000-54295000	Weak transcription	Fetal Brain Male	brain
28	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:54268200-54276200	Weak transcription	Fetal Kidney	kidney
31	chr4:54268200-54280800	Weak transcription	HUVEC	blood vessel
32	chr4:54268400-54280600	Weak transcription	HSMM	muscle
33	chr4:54268400-54319800	Weak transcription	A549	lung
34	chr4:54268600-54287400	Weak transcription	Brain Anterior Caudate	brain
35	chr4:54268800-54280800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:54268800-54292400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr4:54269000-54276200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr4:54269200-54281400	Weak transcription	HepG2	liver
39	chr4:54269200-54293400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr4:54269400-54279400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr4:54269400-54294800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:54269600-54295000	Weak transcription	HMEC	breast
44	chr4:54270000-54275400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:54270000-54275600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:54270000-54275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:54270000-54276000	Weak transcription	Adipose Nuclei	Adipose
48	chr4:54270000-54276400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr4:54270000-54276400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:54270000-54279200	Weak transcription	Monocytes-CD14+_RO01746	blood

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