Variant report

Variant	rs6852884
Chromosome Location	chr4:54236559-54236560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr4:54236300-54236891	K562	blood:	n/a	n/a
2	MAZ	chr4:54236359-54236574	K562	blood:	n/a	n/a
3	EP300	chr4:54236298-54236564	K562	blood:	n/a	chr4:54236318-54236332

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54233149..54235683-chr4:54236271..54238377,2	MCF-7	breast:

Variant related genes	Relation type
SCFD2	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10000746	0.94[CEU][hapmap];0.83[CHB][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10001201	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs10007903	0.81[CEU][hapmap]
rs10011259	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10013573	0.83[YRI][hapmap]
rs10017903	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10021541	0.83[EUR][1000 genomes]
rs1014056	0.84[YRI][hapmap]
rs1021099	0.83[EUR][1000 genomes]
rs11133266	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11133267	0.84[YRI][hapmap]
rs11725230	0.82[CEU][hapmap]
rs11731499	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11734039	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs11947256	0.83[EUR][1000 genomes]
rs12499401	0.80[YRI][hapmap]
rs12649718	0.83[EUR][1000 genomes]
rs12651390	0.82[CEU][hapmap]
rs1471597	0.83[EUR][1000 genomes]
rs1481819	0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481824	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1531748	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1600795	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17082782	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2090117	0.81[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2128103	0.84[YRI][hapmap]
rs2271554	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2412447	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2412488	0.87[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28579268	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35499169	0.82[EUR][1000 genomes]
rs3765158	0.87[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3811782	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3811785	0.82[CEU][hapmap]
rs3817270	0.84[YRI][hapmap]
rs3946758	0.84[YRI][hapmap]
rs4864759	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864760	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs56998298	0.83[EUR][1000 genomes]
rs6420001	0.84[YRI][hapmap]
rs6554095	0.84[YRI][hapmap]
rs6554096	0.84[YRI][hapmap]
rs6554100	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6554104	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs6554105	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs6554106	0.87[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6554108	0.84[YRI][hapmap]
rs6827269	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6828559	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs6833766	0.82[CEU][hapmap]
rs6834934	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6848887	0.84[EUR][1000 genomes]
rs6857024	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857869	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7655975	0.83[EUR][1000 genomes]
rs7684450	0.84[YRI][hapmap]
rs7686177	0.85[EUR][1000 genomes]
rs7686876	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs7697622	0.83[EUR][1000 genomes]
rs7698792	0.82[CEU][hapmap]
rs931181	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs931182	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9312639	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs967018	0.87[YRI][hapmap]
rs980987	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9992820	0.84[YRI][hapmap]
rs9997844	0.84[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6852884	EXOC1	cis	cerebellum	SCAN
rs6852884	TYW1B	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54233000-54238600	Weak transcription	Aorta	Aorta
2	chr4:54233000-54243200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:54235400-54237200	Enhancers	K562	blood

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